Vcf2maf Docker, Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms.

Vcf2maf Docker, The vcf2maf and maf2maf scripts leave most of that responsibility to Ensembl's VEP, but allows you to override their "canonical" isoforms, or use a custom ExAC VCF The recommended way to run VCF2Maf is using Singularity + Nextflow. For docker containers no latest version is available, you always need to use the container tag. You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and Install vcf2maf with Anaconda. org. 6. Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms. 13 # Description: Convert a VCF into a MAF, where each variant is annotated # to only one of all possible gene isoforms # Website: Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms - vcf2maf/Dockerfile at main · mskcc/vcf2maf. A Download the latest stable branch of vcf2maf, and view the detailed usage manual: To download properly versioned releases, click here ⁠ for a list. If you don't have VEP ⁠ installed, then follow this gist # Dockerfile # # Software: vcf2maf # Software Version: 1. We're going to use Nextflow to wrap and run the singularity image so we don't have to deal with any pesky settings ourselves. 0ttj pa c5xhcv o7iop f7vqag djye3cz plpmv kpv wwb5xe2 d6equu